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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsDCRPXGMM

GRLS_grlsDCRPXGMM is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsDCRPXGMM in the atlas
About GRLS_grlsDCRPXGMM

GRLS_grlsDCRPXGMM sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsDCRPXGMM's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsDCRPXGMM's. Click any of them to keep exploring.

  1. GRLS_grls1C3AZ244 26.25
  2. GRLS_grlsRB7HJ7JJ 31.93
  3. Oldies_grlsdf2ca578 31.95
  4. GRLS_grls68OB35EE 32.80
  5. GRLS_grls8YZZ2XSS 34.61
GRLS_grlsDCRPXGMM's breed

GRLS_grlsDCRPXGMM sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.208
y 9.528
z 7.748
PCA-256 distance from breed centroid
36.28
Outlier percentile in breed
59
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsDCRPXGMM scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC66 z = -4.12
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC64 z = 3.10
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC235 z = -3.03
  • chr5:7,618,997 loading 0.0371
  • chr18:10,714,022 loading 0.0318
  • chr25:27,400,046 loading 0.0312
Ancestry reconstruction error: 0.60