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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsUJO0F877

GRLS_grlsUJO0F877 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsUJO0F877 in the atlas
About GRLS_grlsUJO0F877

GRLS_grlsUJO0F877 is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsUJO0F877's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsUJO0F877's. Click any of them to keep exploring.

  1. GRLS_grlsEQTN7K 20.45
  2. GRLS_grlsJQIU7SQQ 22.08
  3. GRLS_grlsUVNTPONN 32.19
  4. GRLS_grlsEC1UTZ11 33.80
  5. GRLS_grlsEBPBMP88 33.85
GRLS_grlsUJO0F877's breed

GRLS_grlsUJO0F877 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.434
y 8.574
z 8.127
PCA-256 distance from breed centroid
46.26
Outlier percentile in breed
94
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsUJO0F877 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC66 z = -5.72
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC113 z = -3.95
  • chr22:17,237,143 loading 0.0474
  • chr22:17,327,096 loading 0.0458
  • chr1:53,531,199 loading 0.0436
PC104 z = 3.78
  • chr22:50,496,950 loading 0.0372
  • chr22:50,557,284 loading 0.0371
  • chr22:50,255,163 loading 0.0370
Ancestry reconstruction error: 0.67
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