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GRLS Hero Oldie · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

Oldies_grls48d7d5dd

Oldies_grls48d7d5dd is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See Oldies_grls48d7d5dd in the atlas
About Oldies_grls48d7d5dd

Oldies_grls48d7d5dd sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
Oldies_grls48d7d5dd's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to Oldies_grls48d7d5dd's. Click any of them to keep exploring.

  1. GRLS_grls3XTNPQTT 26.54
  2. GRLS_grls740BUXXX 26.91
  3. GRLS_grlsPG81W8AA 26.95
  4. GRLS_grls4WDUC3II 27.05
  5. GRLS_grls8QSN40NN 27.25
Oldies_grls48d7d5dd's breed

Oldies_grls48d7d5dd sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.788
y 11.090
z 7.752
PCA-256 distance from breed centroid
26.94
Outlier percentile in breed
8
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls48d7d5dd scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC43 z = -2.33
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC231 z = -2.11
  • chr23:12,238,858 loading 0.0365
  • chr30:3,110,542 loading 0.0349
  • chr26:5,761,213 loading -0.0320
PC214 z = 1.88
  • chr22:26,809,841 loading 0.0329
  • chr13:7,517,248 loading -0.0323
  • chr26:11,829,785 loading 0.0322
Ancestry reconstruction error: 0.56