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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grls0762M2FF

PILOT_grls0762M2FF is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grls0762M2FF in the atlas
About PILOT_grls0762M2FF

PILOT_grls0762M2FF sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PILOT_grls0762M2FF's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grls0762M2FF's. Click any of them to keep exploring.

  1. Oldies_grls38ba8195 32.22
  2. GRLS_grls4WEZX100 32.40
  3. Oldies_grls28ef05a7 32.60
  4. GRLS_grlsFQM4OIAA 32.89
  5. GRLS_grlsLJDEKJ44 32.91
PILOT_grls0762M2FF's breed

PILOT_grls0762M2FF sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.348
y 9.261
z 7.675
PCA-256 distance from breed centroid
37.49
Outlier percentile in breed
66
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grls0762M2FF scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC66 z = -4.18
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC123 z = 2.73
  • chr1:96,988,408 loading 0.0363
  • chr34:2,125,452 loading -0.0340
  • chr9:14,046,505 loading -0.0338
PC98 z = -2.51
  • chr1:70,040,058 loading 0.0369
  • chr1:99,414,793 loading -0.0351
  • chr24:7,157,643 loading 0.0343
Ancestry reconstruction error: 0.61