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CanVAS Shannon · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRe_GT220_GRe_GT220

GRe_GT220_GRe_GT220 is a Golden Retriever from the Shannon research cohort. One of 18,477 dogs in the atlas.

See GRe_GT220_GRe_GT220 in the atlas
About GRe_GT220_GRe_GT220

GRe_GT220_GRe_GT220 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Carries one copy of the FGF4 chondrodysplasia retrogene.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRe_GT220_GRe_GT220's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRe_GT220_GRe_GT220's. Click any of them to keep exploring.

  1. GRLS_grls7PGZ1RNN 28.72
  2. GRLS_grlsYQFB3ZZ 28.82
  3. PFZ26G01_PFZ26G01 29.13
  4. GRLS_grlsDS816Y55 30.63
  5. Oldies_grlsd989ac83 31.11
GRe_GT220_GRe_GT220's breed

GRe_GT220_GRe_GT220 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the CanVAS (Shannon cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 T/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.604
y 11.067
z 8.127
PCA-256 distance from breed centroid
28.52
Outlier percentile in breed
17
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRe_GT220_GRe_GT220 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC154 z = -2.46
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC209 z = -2.13
  • chr7:5,846,709 loading 0.0374
  • chr7:2,256,768 loading -0.0351
  • chr25:8,169,704 loading 0.0337
PC157 z = 2.09
  • chr10:7,000,030 loading 0.0335
  • chr10:4,826,260 loading -0.0333
  • chr23:15,561,811 loading -0.0321
Ancestry reconstruction error: 0.55