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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls0WE9G899

GRLS_grls0WE9G899 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls0WE9G899 in the atlas
About GRLS_grls0WE9G899

GRLS_grls0WE9G899 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls0WE9G899's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls0WE9G899's. Click any of them to keep exploring.

  1. GRLS_grlsJE0A7BJJ 31.72
  2. GRLS_grlsHEN2HZ55 31.89
  3. GRLS_grlsDQLYSSZZ 32.37
  4. GRLS_grlsNJ3YMTMM 32.43
  5. PILOT_grlsGGHFUQII 33.21
GRLS_grls0WE9G899's breed

GRLS_grls0WE9G899 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.240
y 9.838
z 9.099
PCA-256 distance from breed centroid
32.95
Outlier percentile in breed
42
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls0WE9G899 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC237 z = -2.45
  • chr18:10,316,807 loading 0.0412
  • chr18:49,993,975 loading -0.0328
  • chr4:32,494,543 loading 0.0323
PC205 z = -2.41
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC108 z = -2.35
  • chr7:42,690,827 loading 0.0435
  • chr21:34,428,857 loading -0.0342
  • chr34:4,429,712 loading -0.0326
Ancestry reconstruction error: 0.52