Skip to main content
snıff
GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsHEN2HZ55

GRLS_grlsHEN2HZ55 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsHEN2HZ55 in the atlas
About GRLS_grlsHEN2HZ55

GRLS_grlsHEN2HZ55 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsHEN2HZ55's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsHEN2HZ55's. Click any of them to keep exploring.

  1. GRLS_grls0WE9G899 31.89
  2. GRLS_grlsT8P263HH 33.20
  3. GRLS_grls3MRP58VV 33.48
  4. GRLS_grlsFVH2VFOO 34.01
  5. GRLS_grlsONZRBVGG 34.86
GRLS_grlsHEN2HZ55's breed

GRLS_grlsHEN2HZ55 sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.395
y 9.838
z 8.754
PCA-256 distance from breed centroid
36.02
Outlier percentile in breed
58
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsHEN2HZ55 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC157 z = -2.55
  • chr10:7,000,030 loading 0.0335
  • chr10:4,826,260 loading -0.0333
  • chr23:15,561,811 loading -0.0321
PC98 z = -2.43
  • chr1:70,040,058 loading 0.0369
  • chr1:99,414,793 loading -0.0351
  • chr24:7,157,643 loading 0.0343
PC13 z = 2.32
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
Ancestry reconstruction error: 0.56