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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls1B9PK7YY

GRLS_grls1B9PK7YY is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls1B9PK7YY in the atlas
About GRLS_grls1B9PK7YY

GRLS_grls1B9PK7YY is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls1B9PK7YY's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls1B9PK7YY's. Click any of them to keep exploring.

  1. PILOT_grlsRNPT4TKK 29.02
  2. PFZ8A04_PFZ8A04 33.28
  3. Oldies_grls33b4d7d3 34.10
  4. GRLS_grlsLQK0BOJJ 34.11
  5. GRLS_grlsUC0R7HMM 34.64
GRLS_grls1B9PK7YY's breed

GRLS_grls1B9PK7YY sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.931
y 9.390
z 8.208
PCA-256 distance from breed centroid
40.82
Outlier percentile in breed
80
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls1B9PK7YY scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC117 z = -3.94
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
PC116 z = -3.85
  • chr21:8,227,069 loading 0.0376
  • chr16:47,900,123 loading 0.0333
  • chr1:24,270,460 loading 0.0312
PC111 z = 3.66
  • chr25:27,400,046 loading 0.0340
  • chr8:38,891,669 loading -0.0320
  • chr6:31,045,365 loading -0.0319
Ancestry reconstruction error: 0.64