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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls3SN3WPJJ

GRLS_grls3SN3WPJJ is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls3SN3WPJJ in the atlas
About GRLS_grls3SN3WPJJ

GRLS_grls3SN3WPJJ sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grls3SN3WPJJ's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls3SN3WPJJ's. Click any of them to keep exploring.

  1. GRLS_grlsU6KIHA77 25.78
  2. GRLS_grlsUD2OGC44 25.99
  3. GRLS_grls1N450WSS 32.72
  4. Oldies_grls5e41c65c 34.62
  5. GRLS_grlsEWO92YII 34.97
GRLS_grls3SN3WPJJ's breed

GRLS_grls3SN3WPJJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.270
y 9.736
z 7.859
PCA-256 distance from breed centroid
32.67
Outlier percentile in breed
40
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls3SN3WPJJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC179 z = -3.21
  • chr34:3,531,310 loading 0.0341
  • chr34:3,128,578 loading -0.0327
  • chr4:57,360,298 loading -0.0326
PC122 z = 2.81
  • chr1:69,449,779 loading 0.0431
  • chr1:69,785,342 loading 0.0329
  • chr10:4,740,874 loading 0.0326
PC185 z = 2.60
  • chr7:42,518,817 loading 0.0342
  • chr11:2,541,241 loading 0.0331
  • chr27:42,849,032 loading -0.0324
Ancestry reconstruction error: 0.58