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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls44MCF9HH

GRLS_grls44MCF9HH is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls44MCF9HH in the atlas
About GRLS_grls44MCF9HH

GRLS_grls44MCF9HH sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls44MCF9HH's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls44MCF9HH's. Click any of them to keep exploring.

  1. GRLS_grlsATVT2KUU 21.23
  2. GRLS_grls4M9RF144 28.48
  3. GRLS_grlsPL19YDHH 33.88
  4. GRLS_grlsU3Y3B3WW 34.01
  5. GRLS_grlsDA01X5MM 36.75
GRLS_grls44MCF9HH's breed

GRLS_grls44MCF9HH sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.142
y 10.226
z 8.161
PCA-256 distance from breed centroid
36.52
Outlier percentile in breed
61
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls44MCF9HH scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC135 z = -3.73
  • chr8:33,499,010 loading 0.0341
  • chr6:30,409,356 loading -0.0338
  • chr34:15,382,542 loading -0.0330
PC103 z = -2.88
  • chr1:73,451,600 loading 0.0356
  • chr1:69,785,342 loading 0.0343
  • chr18:18,333,364 loading 0.0329
PC176 z = -2.84
  • chr13:1,243,516 loading 0.0372
  • chr13:4,612,002 loading -0.0358
  • chr13:2,021,999 loading -0.0342
Ancestry reconstruction error: 0.60