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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls52PM8XX

GRLS_grls52PM8XX is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls52PM8XX in the atlas
About GRLS_grls52PM8XX

GRLS_grls52PM8XX sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls52PM8XX's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls52PM8XX's. Click any of them to keep exploring.

  1. GRLS_grlsTHRCRX22 31.42
  2. GRLS_grlsTLHX4DRR 31.85
  3. Oldies_grls46b8e2fc 31.95
  4. GRLS_grls1LSGW1BB 32.02
  5. GRLS_grlsZI7MU2EE 32.25
GRLS_grls52PM8XX's breed

GRLS_grls52PM8XX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/C
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.786
y 10.765
z 7.345
PCA-256 distance from breed centroid
30.16
Outlier percentile in breed
27
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls52PM8XX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC166 z = 2.64
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
PC119 z = 2.50
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
PC99 z = -2.19
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
Ancestry reconstruction error: 0.58