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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls63ITE4KK

GRLS_grls63ITE4KK is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls63ITE4KK in the atlas
About GRLS_grls63ITE4KK

GRLS_grls63ITE4KK is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls63ITE4KK's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls63ITE4KK's. Click any of them to keep exploring.

  1. GRLS_grlsQCNW6EZZ 27.08
  2. GRLS_grls2VKC6477 28.95
  3. GRLS_grlsVP2MB000 31.94
  4. PILOT_grls0OENGRDD 32.07
  5. GRLS_grls7FLU3VQQ 32.38
GRLS_grls63ITE4KK's breed

GRLS_grls63ITE4KK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 10.382
y 8.305
z 8.845
PCA-256 distance from breed centroid
41.14
Outlier percentile in breed
81
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls63ITE4KK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC107 z = 3.18
  • chr10:6,497,921 loading 0.0390
  • chr3:5,565,848 loading -0.0351
  • chr3:6,720,531 loading 0.0336
PC222 z = -2.73
  • chr12:60,458,843 loading 0.0369
  • chr13:14,089,127 loading 0.0363
  • chr34:29,222,122 loading -0.0309
PC43 z = 2.68
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
Ancestry reconstruction error: 0.63