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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls6JBFIH66

GRLS_grls6JBFIH66 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls6JBFIH66 in the atlas
About GRLS_grls6JBFIH66

GRLS_grls6JBFIH66 is a notable Golden Retriever - distinctive within the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls6JBFIH66's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls6JBFIH66's. Click any of them to keep exploring.

  1. GRLS_grls6W6FNLOO 30.98
  2. GRLS_grls8WD3CH77 32.73
  3. GRLS_grlsTKCRI2OO 32.94
  4. GRLS_grlsTWDNOIWW 33.00
  5. GRLS_grlsI3WY0077 33.22
GRLS_grls6JBFIH66's breed

GRLS_grls6JBFIH66 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.429
y 10.632
z 9.696
PCA-256 distance from breed centroid
43.58
Outlier percentile in breed
88
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls6JBFIH66 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC63 z = 4.86
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC64 z = -4.07
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
PC72 z = 3.01
  • chr22:15,601,204 loading 0.0364
  • chr22:2,850,748 loading 0.0330
  • chr22:15,670,985 loading -0.0317
Ancestry reconstruction error: 0.65