Skip to main content
snıff
GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls80BUDJKK

GRLS_grls80BUDJKK is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls80BUDJKK in the atlas
About GRLS_grls80BUDJKK

GRLS_grls80BUDJKK sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls80BUDJKK's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls80BUDJKK's. Click any of them to keep exploring.

  1. GRLS_grlsFPJ3QF99 27.25
  2. GRLS_grlsI4RK7W55 32.78
  3. GRLS_grls98JY79QQ 33.52
  4. GRLS_grlsISV93MPP 33.71
  5. GRLS_grlsJ9P3IN00 34.12
GRLS_grls80BUDJKK's breed

GRLS_grls80BUDJKK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.094
y 9.630
z 7.855
PCA-256 distance from breed centroid
33.92
Outlier percentile in breed
47
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls80BUDJKK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC104 z = -3.29
  • chr22:50,496,950 loading 0.0372
  • chr22:50,557,284 loading 0.0371
  • chr22:50,255,163 loading 0.0370
PC138 z = 3.00
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
PC158 z = 2.83
  • chr1:69,893,718 loading 0.0314
  • chr1:64,453,595 loading -0.0313
  • chr8:29,102,271 loading -0.0309
Ancestry reconstruction error: 0.57