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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls8TET2OXX

GRLS_grls8TET2OXX is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls8TET2OXX in the atlas
About GRLS_grls8TET2OXX

GRLS_grls8TET2OXX sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grls8TET2OXX's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls8TET2OXX's. Click any of them to keep exploring.

  1. Oldies_grls60d0c7ae 29.14
  2. GRLS_grls47TW3NCC 30.03
  3. PFZ40G02_PFZ40G02 30.46
  4. Oldies_grlsca24b328 30.51
  5. PFZ8C06_PFZ8C06 30.74
GRLS_grls8TET2OXX's breed

GRLS_grls8TET2OXX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.011
y 10.735
z 7.810
PCA-256 distance from breed centroid
33.99
Outlier percentile in breed
47
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls8TET2OXX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC224 z = -3.35
  • chr1:60,626,811 loading 0.0345
  • chr1:60,550,367 loading 0.0321
  • chr7:17,102,947 loading 0.0300
PC19 z = -3.02
  • chr36:5,342,283 loading 0.0327
  • chr3:69,391,244 loading 0.0300
  • chr25:17,826,837 loading -0.0278
PC175 z = -2.50
  • chr4:78,342,208 loading 0.0332
  • chr20:38,715,188 loading 0.0330
  • chr20:38,805,558 loading 0.0328
Ancestry reconstruction error: 0.64