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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grls9H8LZW33

GRLS_grls9H8LZW33 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grls9H8LZW33 in the atlas
About GRLS_grls9H8LZW33

GRLS_grls9H8LZW33 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grls9H8LZW33's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grls9H8LZW33's. Click any of them to keep exploring.

  1. GRLS_grlsTBZUF3GG 22.31
  2. GRLS_grlsXMRZ85II 24.18
  3. GRLS_grls9294K8BB 24.24
  4. PILOT_grlsSZR98S88 29.62
  5. GRLS_grls9ZG7XWKK 29.75
GRLS_grls9H8LZW33's breed

GRLS_grls9H8LZW33 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.617
y 9.441
z 8.719
PCA-256 distance from breed centroid
38.49
Outlier percentile in breed
70
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grls9H8LZW33 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC106 z = -3.20
  • chr3:6,720,531 loading 0.0359
  • chr6:29,063,786 loading -0.0348
  • chr3:6,180,668 loading 0.0337
PC213 z = 2.98
  • chr28:12,405,348 loading 0.0374
  • chr22:28,989,668 loading -0.0358
  • chr20:42,542,218 loading -0.0345
PC155 z = 2.73
  • chr3:3,559,803 loading 0.0324
  • chr6:3,540,503 loading -0.0319
  • chr15:3,475,065 loading 0.0316
Ancestry reconstruction error: 0.59