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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsA6H4Q3RR

GRLS_grlsA6H4Q3RR is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsA6H4Q3RR in the atlas
About GRLS_grlsA6H4Q3RR

GRLS_grlsA6H4Q3RR is a strong genetic outlier within the Golden Retriever cluster - among the most distinctive examples of their breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsA6H4Q3RR's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsA6H4Q3RR's. Click any of them to keep exploring.

  1. GRLS_grls61SREENN 23.06
  2. GRLS_grlsGIYIEJ22 33.65
  3. GRLS_grls0D8TYTHH 34.41
  4. GRLS_grlsSGMC3CC 35.78
  5. PILOT_grlsL8SOU6CC 36.68
GRLS_grlsA6H4Q3RR's breed

GRLS_grlsA6H4Q3RR sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.649
y 10.230
z 9.022
PCA-256 distance from breed centroid
46.20
Outlier percentile in breed
94
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsA6H4Q3RR scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC119 z = 4.18
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
PC53 z = -3.80
  • chr1:72,254,803 loading 0.0346
  • chr1:70,825,780 loading 0.0344
  • chr14:9,177,180 loading 0.0335
PC49 z = 3.78
  • chr22:1,808,281 loading 0.0358
  • chr1:70,511,608 loading 0.0354
  • chr22:2,157,682 loading 0.0341
Ancestry reconstruction error: 0.67