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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsBT5OGSHH

GRLS_grlsBT5OGSHH is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsBT5OGSHH in the atlas
About GRLS_grlsBT5OGSHH

GRLS_grlsBT5OGSHH sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsBT5OGSHH's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsBT5OGSHH's. Click any of them to keep exploring.

  1. GRLS_grlsNP2GOS33 21.09
  2. PILOT_grls0D3MFXFF 21.26
  3. GRLS_grlsYQFB3ZZ 27.40
  4. GRLS_grls7O2759MM 27.96
  5. GRLS_grls4Q3HPJJJ 28.39
GRLS_grlsBT5OGSHH's breed

GRLS_grlsBT5OGSHH sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.518
y 11.160
z 8.009
PCA-256 distance from breed centroid
27.36
Outlier percentile in breed
10
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsBT5OGSHH scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC117 z = -3.46
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
PC43 z = -2.53
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC182 z = -2.38
  • chr7:40,535,333 loading 0.0363
  • chr7:41,489,243 loading 0.0356
  • chr15:32,204,502 loading 0.0340
Ancestry reconstruction error: 0.54