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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsCQG3CGNN

GRLS_grlsCQG3CGNN is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsCQG3CGNN in the atlas
About GRLS_grlsCQG3CGNN

GRLS_grlsCQG3CGNN is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsCQG3CGNN's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsCQG3CGNN's. Click any of them to keep exploring.

  1. GRLS_grlsSWL86DJJ 21.77
  2. GRLS_grlsVYWVEBUU 25.93
  3. GRLS_grls4UW71QLL 31.01
  4. GRLS_grlsEO82XEOO 31.60
  5. GRLS_grlsKK91TIOO 34.58
GRLS_grlsCQG3CGNN's breed

GRLS_grlsCQG3CGNN sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.304
y 9.657
z 8.710
PCA-256 distance from breed centroid
42.95
Outlier percentile in breed
86
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsCQG3CGNN scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC244 z = -4.19
  • chr9:27,289,940 loading 0.0354
  • chr25:21,796,415 loading 0.0335
  • chr20:38,277,512 loading -0.0333
PC211 z = -3.89
  • chr18:2,884,545 loading 0.0378
  • chr18:2,790,632 loading -0.0346
  • chr19:17,007,564 loading -0.0346
PC227 z = 3.85
  • chr27:43,803,988 loading 0.0373
  • chr12:19,514,576 loading 0.0344
  • chr20:11,758,428 loading -0.0328
Ancestry reconstruction error: 0.66