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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsCXF8O7EE

GRLS_grlsCXF8O7EE is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsCXF8O7EE in the atlas
About GRLS_grlsCXF8O7EE

GRLS_grlsCXF8O7EE sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsCXF8O7EE's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsCXF8O7EE's. Click any of them to keep exploring.

  1. GRLS_grls56OU2P 27.78
  2. Oldies_grls38c6ec88 27.89
  3. PILOT_grlsJ7NC68VV 28.03
  4. PILOT_grlsLJPZ38GG 28.03
  5. GRLS_grlsNPNE07BB 28.04
GRLS_grlsCXF8O7EE's breed

GRLS_grlsCXF8O7EE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/C
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.333
y 11.135
z 8.079
PCA-256 distance from breed centroid
25.74
Outlier percentile in breed
3
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsCXF8O7EE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC146 z = 2.07
  • chr2:41,835,446 loading 0.0357
  • chr2:40,086,289 loading 0.0341
  • chr22:28,657,814 loading -0.0335
PC142 z = 1.81
  • chr23:22,412,099 loading 0.0339
  • chr12:15,112,297 loading -0.0336
  • chr12:4,421,359 loading 0.0318
PC255 z = 1.80
  • chr23:37,041,440 loading 0.0347
  • chr1:100,944,840 loading 0.0344
  • chr1:101,382,836 loading -0.0320
Ancestry reconstruction error: 0.53