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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsDC6NBZBB

GRLS_grlsDC6NBZBB is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsDC6NBZBB in the atlas
About GRLS_grlsDC6NBZBB

GRLS_grlsDC6NBZBB sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsDC6NBZBB's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsDC6NBZBB's. Click any of them to keep exploring.

  1. GRLS_grls3Y67N8SS 26.98
  2. GRLS_grlsZH05J9RR 31.83
  3. PILOT_grlsECY6GTPP 32.66
  4. GRLS_grlsR6G4GRHH 32.95
  5. GRLS_grlsZ7XH7B66 33.73
GRLS_grlsDC6NBZBB's breed

GRLS_grlsDC6NBZBB sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 73%
  2. Labrador Retriever 27%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.938
y 10.577
z 8.394
PCA-256 distance from breed centroid
30.91
Outlier percentile in breed
31
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsDC6NBZBB scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC112 z = 2.89
  • chr3:6,565,383 loading 0.0418
  • chr18:10,714,022 loading 0.0387
  • chr3:6,720,531 loading 0.0365
PC101 z = -2.82
  • chr1:74,476,966 loading 0.0401
  • chr1:74,547,137 loading -0.0372
  • chr1:74,609,719 loading 0.0354
PC98 z = -2.66
  • chr1:70,040,058 loading 0.0369
  • chr1:99,414,793 loading -0.0351
  • chr24:7,157,643 loading 0.0343
Ancestry reconstruction error: 0.56