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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsE9J2YZTT

GRLS_grlsE9J2YZTT is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsE9J2YZTT in the atlas
About GRLS_grlsE9J2YZTT

GRLS_grlsE9J2YZTT sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsE9J2YZTT's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsE9J2YZTT's. Click any of them to keep exploring.

  1. GRLS_grlsEFGZ0200 25.80
  2. GRLS_grlsFSBDGO11 26.48
  3. GRLS_grlsSD7E777 32.54
  4. GRLS_grlsMG8OL6DD 34.51
  5. GRLS_grlsI8I5YHQQ 34.94
GRLS_grlsE9J2YZTT's breed

GRLS_grlsE9J2YZTT sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.880
y 9.820
z 8.919
PCA-256 distance from breed centroid
34.49
Outlier percentile in breed
50
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsE9J2YZTT scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC217 z = 3.38
  • chr3:37,847,773 loading 0.0404
  • chr3:37,885,813 loading 0.0400
  • chr3:38,305,313 loading 0.0391
PC226 z = -3.33
  • chr21:30,613,458 loading 0.0378
  • chr28:5,497,677 loading 0.0367
  • chr28:5,428,661 loading 0.0358
PC146 z = -3.11
  • chr2:41,835,446 loading 0.0357
  • chr2:40,086,289 loading 0.0341
  • chr22:28,657,814 loading -0.0335
Ancestry reconstruction error: 0.57