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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsE9MPH2YY

GRLS_grlsE9MPH2YY is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsE9MPH2YY in the atlas
About GRLS_grlsE9MPH2YY

GRLS_grlsE9MPH2YY sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsE9MPH2YY's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsE9MPH2YY's. Click any of them to keep exploring.

  1. GRLS_grlsLMEV166 25.94
  2. GRLS_grlsFY8KSI00 26.92
  3. GRLS_grlsH8UP2NNN 29.73
  4. GRLS_grls4QMUYS99 30.63
  5. GRLS_grlsTASR6WNN 32.39
GRLS_grlsE9MPH2YY's breed

GRLS_grlsE9MPH2YY sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 80%
  2. Labrador Retriever 20%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.270
y 10.493
z 8.868
PCA-256 distance from breed centroid
36.53
Outlier percentile in breed
61
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsE9MPH2YY scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC117 z = 3.09
  • chr1:102,829,549 loading 0.0371
  • chr8:40,351,665 loading 0.0356
  • chr1:70,953,125 loading 0.0339
PC207 z = 2.99
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
PC197 z = -2.96
  • chr7:40,629,884 loading 0.0367
  • chr7:40,535,333 loading 0.0324
  • chr18:50,696,547 loading 0.0323
Ancestry reconstruction error: 0.60