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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsFLW1MFII

GRLS_grlsFLW1MFII is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsFLW1MFII in the atlas
About GRLS_grlsFLW1MFII

GRLS_grlsFLW1MFII sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsFLW1MFII's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsFLW1MFII's. Click any of them to keep exploring.

  1. GRLS_grlsRVRN27BB 20.11
  2. GRLS_grlsT1P6CE11 30.45
  3. GRLS_grlsDZ82BBB 31.00
  4. GRLS_grlsLAIDPN99 33.55
  5. GRLS_grls1T0UJ7BB 34.38
GRLS_grlsFLW1MFII's breed

GRLS_grlsFLW1MFII sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.671
y 10.331
z 8.150
PCA-256 distance from breed centroid
32.07
Outlier percentile in breed
38
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsFLW1MFII scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC139 z = -3.59
  • chr11:59,916,847 loading 0.0380
  • chr1:13,688,590 loading -0.0336
  • chr9:44,269,754 loading 0.0311
PC104 z = 3.16
  • chr22:50,496,950 loading 0.0372
  • chr22:50,557,284 loading 0.0371
  • chr22:50,255,163 loading 0.0370
PC214 z = -3.09
  • chr22:26,809,841 loading 0.0329
  • chr13:7,517,248 loading -0.0323
  • chr26:11,829,785 loading 0.0322
Ancestry reconstruction error: 0.55