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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsGJ8G77ZZ

GRLS_grlsGJ8G77ZZ is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsGJ8G77ZZ in the atlas
About GRLS_grlsGJ8G77ZZ

GRLS_grlsGJ8G77ZZ sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsGJ8G77ZZ's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsGJ8G77ZZ's. Click any of them to keep exploring.

  1. PILOT_grlsGRLXJ333 25.53
  2. GRLS_grlsSBT32QTT 27.87
  3. GRLS_grlsN6FF3KK 34.62
  4. GRLS_grls4XHMR99 34.65
  5. GRLS_grlsHMI6LJKK 34.99
GRLS_grlsGJ8G77ZZ's breed

GRLS_grlsGJ8G77ZZ sits firmly in the Golden Retriever cluster.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 100%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.744
y 9.251
z 8.697
PCA-256 distance from breed centroid
35.93
Outlier percentile in breed
58
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsGJ8G77ZZ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC204 z = -2.96
  • chr5:63,349,947 loading 0.0351
  • chr5:63,561,040 loading 0.0350
  • chr5:3,335,614 loading -0.0334
PC97 z = 2.68
  • chr15:42,263,341 loading 0.0348
  • chr18:11,175,691 loading -0.0320
  • chr1:63,849,832 loading 0.0318
PC154 z = 2.66
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
Ancestry reconstruction error: 0.57