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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PILOT_grlsGRLXJ333

PILOT_grlsGRLXJ333 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See PILOT_grlsGRLXJ333 in the atlas
About PILOT_grlsGRLXJ333

PILOT_grlsGRLXJ333 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PILOT_grlsGRLXJ333's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PILOT_grlsGRLXJ333's. Click any of them to keep exploring.

  1. GRLS_grlsGJ8G77ZZ 25.53
  2. GRLS_grlsSBT32QTT 30.11
  3. GRLS_grlsSIHXOLII 32.64
  4. GRLS_grls95XW2JVV 34.74
  5. GRLS_grls1T0UJ7BB 34.97
PILOT_grlsGRLXJ333's breed

PILOT_grlsGRLXJ333 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.790
y 9.222
z 8.694
PCA-256 distance from breed centroid
36.38
Outlier percentile in breed
60
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PILOT_grlsGRLXJ333 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC207 z = -3.27
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
PC93 z = 3.12
  • chr6:4,184,827 loading 0.0321
  • chr23:33,432,720 loading -0.0321
  • chr6:3,012,938 loading 0.0307
PC168 z = -2.93
  • chr13:7,517,248 loading 0.0370
  • chr13:1,243,516 loading -0.0357
  • chr3:3,383,464 loading 0.0349
Ancestry reconstruction error: 0.57