Skip to main content
snıff
GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsI8B40J88

GRLS_grlsI8B40J88 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsI8B40J88 in the atlas
About GRLS_grlsI8B40J88

GRLS_grlsI8B40J88 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsI8B40J88's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsI8B40J88's. Click any of them to keep exploring.

  1. GRLS_grlsN5BRDKGG 22.04
  2. GRLS_grls2RNDQUCC 29.68
  3. GRLS_grls494T1OXX 30.20
  4. GRLS_grlsZJ5CSD66 30.36
  5. GRLS_grls4DYV0WW 30.53
GRLS_grlsI8B40J88's breed

GRLS_grlsI8B40J88 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.977
y 11.467
z 7.911
PCA-256 distance from breed centroid
31.09
Outlier percentile in breed
33
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsI8B40J88 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC216 z = 2.63
  • chr6:57,387,289 loading 0.0303
  • chr14:13,904,420 loading -0.0294
  • chr30:3,709,721 loading 0.0293
PC150 z = -2.25
  • chr18:2,954,407 loading 0.0354
  • chr4:9,808,812 loading -0.0348
  • chr24:4,114,956 loading 0.0343
PC106 z = -2.14
  • chr3:6,720,531 loading 0.0359
  • chr6:29,063,786 loading -0.0348
  • chr3:6,180,668 loading 0.0337
Ancestry reconstruction error: 0.63