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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsLJOFHK66

GRLS_grlsLJOFHK66 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsLJOFHK66 in the atlas
About GRLS_grlsLJOFHK66

GRLS_grlsLJOFHK66 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsLJOFHK66's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsLJOFHK66's. Click any of them to keep exploring.

  1. GRLS_grlsFIZCSR55 22.21
  2. GRLS_grls92X9TK00 35.84
  3. GRLS_grls2JIWZ3TT 35.98
  4. GRLS_grlsFBCOXUUU 36.38
  5. GRLS_grlsD0U7OQ22 36.88
GRLS_grlsLJOFHK66's breed

GRLS_grlsLJOFHK66 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.563
y 10.088
z 8.833
PCA-256 distance from breed centroid
39.68
Outlier percentile in breed
75
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsLJOFHK66 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC165 z = 3.41
  • chr28:1,791,942 loading 0.0385
  • chr19:1,685,081 loading -0.0372
  • chr28:2,607,542 loading -0.0344
PC198 z = -3.30
  • chr2:48,735,597 loading 0.0380
  • chr23:1,924,139 loading -0.0317
  • chr23:1,615,600 loading -0.0317
PC215 z = -3.00
  • chr19:7,211,690 loading 0.0376
  • chr19:7,271,993 loading 0.0341
  • chr27:40,183,759 loading 0.0317
Ancestry reconstruction error: 0.60