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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsMJQO54ZZ

GRLS_grlsMJQO54ZZ is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsMJQO54ZZ in the atlas
About GRLS_grlsMJQO54ZZ

GRLS_grlsMJQO54ZZ sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsMJQO54ZZ's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsMJQO54ZZ's. Click any of them to keep exploring.

  1. GRLS_grls6LO79NAA 22.47
  2. GRLS_grlsH481VBVV 25.49
  3. GRLS_grlsOAMNHF88 29.87
  4. GRLS_grls4BWUAF88 31.11
  5. GRLS_grlsZI7MU2EE 31.72
GRLS_grlsMJQO54ZZ's breed

GRLS_grlsMJQO54ZZ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.121
y 10.763
z 7.866
PCA-256 distance from breed centroid
28.93
Outlier percentile in breed
20
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsMJQO54ZZ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC186 z = -2.94
  • chr3:6,234,729 loading 0.0318
  • chr23:19,305,339 loading 0.0317
  • chr19:17,376,904 loading 0.0316
PC152 z = 2.49
  • chr25:28,621,324 loading 0.0364
  • chr20:11,911,649 loading 0.0323
  • chr20:7,517,267 loading -0.0311
PC194 z = 2.39
  • chr25:31,475,309 loading 0.0351
  • chr3:6,392,552 loading 0.0298
  • chr25:27,400,046 loading 0.0293
Ancestry reconstruction error: 0.53