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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsMOCF0544

GRLS_grlsMOCF0544 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsMOCF0544 in the atlas
About GRLS_grlsMOCF0544

GRLS_grlsMOCF0544 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsMOCF0544's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsMOCF0544's. Click any of them to keep exploring.

  1. GRLS_grlsC8TTG8NN 33.87
  2. GRLS_grls5KFD0PNN 34.26
  3. GRLS_grls3JBT2T99 34.56
  4. GRLS_grls8XUFKT22 35.13
  5. PILOT_grlsZ7KMZN00 35.48
GRLS_grlsMOCF0544's breed

GRLS_grlsMOCF0544 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.278
y 9.674
z 8.438
PCA-256 distance from breed centroid
35.23
Outlier percentile in breed
54
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsMOCF0544 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC207 z = -3.12
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
PC250 z = -3.02
  • chr9:17,840,166 loading 0.0300
  • chr9:50,441,577 loading 0.0297
  • chr15:28,843,971 loading -0.0296
PC163 z = 2.72
  • chr34:1,919,265 loading 0.0369
  • chr34:2,440,834 loading -0.0368
  • chr34:1,346,136 loading 0.0366
Ancestry reconstruction error: 0.56