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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsOHF03CRR

GRLS_grlsOHF03CRR is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsOHF03CRR in the atlas
About GRLS_grlsOHF03CRR

GRLS_grlsOHF03CRR sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsOHF03CRR's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsOHF03CRR's. Click any of them to keep exploring.

  1. GRLS_grls9V2Q8BSS 28.42
  2. PILOT_grlsCZAFQ7II 28.93
  3. Oldies_grls8bec043f 29.20
  4. GRLS_grlsQ62IHG88 29.56
  5. Oldies_grls60d0c7ae 30.59
GRLS_grlsOHF03CRR's breed

GRLS_grlsOHF03CRR sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 5.542
y 10.581
z 7.883
PCA-256 distance from breed centroid
33.31
Outlier percentile in breed
44
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsOHF03CRR scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC148 z = -3.52
  • chr6:30,769,727 loading 0.0436
  • chr1:62,992,483 loading -0.0356
  • chr6:30,876,588 loading -0.0355
PC19 z = -2.72
  • chr36:5,342,283 loading 0.0327
  • chr3:69,391,244 loading 0.0300
  • chr25:17,826,837 loading -0.0278
PC153 z = 2.07
  • chr1:8,915,253 loading 0.0302
  • chr21:10,672,189 loading 0.0296
  • chr32:19,444,200 loading -0.0293
Ancestry reconstruction error: 0.62