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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsOW1GMMNN

GRLS_grlsOW1GMMNN is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsOW1GMMNN in the atlas
About GRLS_grlsOW1GMMNN

GRLS_grlsOW1GMMNN sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsOW1GMMNN's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsOW1GMMNN's. Click any of them to keep exploring.

  1. PILOT_grlsEJ9IV622 34.96
  2. GRLS_grls2WI1KSTT 35.76
  3. GRLS_grls04O1IQ00 35.78
  4. GRLS_grlsYSCKJPUU 35.81
  5. GRLS_grlsZQDR8U77 36.29
GRLS_grlsOW1GMMNN's breed

GRLS_grlsOW1GMMNN sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.770
y 9.489
z 9.001
PCA-256 distance from breed centroid
36.65
Outlier percentile in breed
61
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsOW1GMMNN scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC87 z = 4.29
  • chr18:17,740,291 loading 0.0425
  • chr18:13,022,424 loading -0.0364
  • chr18:14,917,450 loading -0.0361
PC149 z = -3.40
  • chr14:37,146,317 loading 0.0319
  • chr1:49,304,485 loading -0.0313
  • chr1:61,522,946 loading -0.0291
PC176 z = -3.24
  • chr13:1,243,516 loading 0.0372
  • chr13:4,612,002 loading -0.0358
  • chr13:2,021,999 loading -0.0342
Ancestry reconstruction error: 0.57