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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsPV76GGVV

GRLS_grlsPV76GGVV is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsPV76GGVV in the atlas
About GRLS_grlsPV76GGVV

GRLS_grlsPV76GGVV sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsPV76GGVV's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsPV76GGVV's. Click any of them to keep exploring.

  1. GRLS_grlsSBT32QTT 31.87
  2. GRLS_grlsOESN6EII 33.38
  3. GRLS_grlsEKM79DXX 33.64
  4. 10931_10931 33.72
  5. GRLS_grlsQDPXP9 34.19
GRLS_grlsPV76GGVV's breed

GRLS_grlsPV76GGVV sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.635
y 9.333
z 8.476
PCA-256 distance from breed centroid
32.93
Outlier percentile in breed
42
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsPV76GGVV scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC240 z = -2.91
  • chr16:43,515,565 loading 0.0364
  • chr12:4,421,359 loading 0.0345
  • chr12:4,288,226 loading 0.0342
PC188 z = 2.80
  • chr7:21,167,050 loading 0.0346
  • chr25:32,919,094 loading 0.0335
  • chr7:21,698,587 loading 0.0335
PC238 z = 2.40
  • chr19:11,652,672 loading 0.0365
  • chr13:13,884,830 loading -0.0338
  • chr3:70,346,120 loading -0.0302
Ancestry reconstruction error: 0.53