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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsQVL0ZFEE

GRLS_grlsQVL0ZFEE is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsQVL0ZFEE in the atlas
About GRLS_grlsQVL0ZFEE

GRLS_grlsQVL0ZFEE sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted small by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsQVL0ZFEE's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsQVL0ZFEE's. Click any of them to keep exploring.

  1. GRLS_grlsH2QK8KK 30.61
  2. GRLS_grlsSYFLK1II 32.30
  3. GRLS_grlsB4GNNEMM 32.34
  4. PILOT_grlsI831ES77 32.45
  5. GRLS_grlsMGE5UI55 32.72
GRLS_grlsQVL0ZFEE's breed

GRLS_grlsQVL0ZFEE sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 75%
  2. Labrador Retriever 25%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.732
y 10.440
z 7.888
PCA-256 distance from breed centroid
26.59
Outlier percentile in breed
7
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsQVL0ZFEE scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC207 z = 3.31
  • chr13:666,991 loading 0.0347
  • chr25:4,215,319 loading -0.0336
  • chr18:33,604,976 loading 0.0307
PC187 z = -2.89
  • chr20:38,870,936 loading 0.0437
  • chr20:38,628,243 loading -0.0415
  • chr14:6,119,398 loading -0.0403
PC243 z = -2.37
  • chr28:2,607,542 loading 0.0337
  • chr6:55,527,821 loading 0.0334
  • chr28:36,111,093 loading -0.0311
Ancestry reconstruction error: 0.50