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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsUZMK2DKK

GRLS_grlsUZMK2DKK is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsUZMK2DKK in the atlas
About GRLS_grlsUZMK2DKK

GRLS_grlsUZMK2DKK sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsUZMK2DKK's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsUZMK2DKK's. Click any of them to keep exploring.

  1. GRLS_grls3N5D0C33 29.98
  2. GRLS_grls8JLHU1WW 31.10
  3. PILOT_grls6G37VK44 33.38
  4. GRLS_grlsYMC2WERR 33.77
  5. GRLS_grls4WD6UGG 34.75
GRLS_grlsUZMK2DKK's breed

GRLS_grlsUZMK2DKK sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.941
y 9.572
z 8.671
PCA-256 distance from breed centroid
35.74
Outlier percentile in breed
56
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsUZMK2DKK scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC229 z = 4.07
  • chr1:6,763,543 loading 0.0357
  • chr22:9,968,688 loading -0.0319
  • chr5:58,349,244 loading -0.0314
PC150 z = 2.61
  • chr18:2,954,407 loading 0.0354
  • chr4:9,808,812 loading -0.0348
  • chr24:4,114,956 loading 0.0343
PC153 z = -2.57
  • chr1:8,915,253 loading 0.0302
  • chr21:10,672,189 loading 0.0296
  • chr32:19,444,200 loading -0.0293
Ancestry reconstruction error: 0.56