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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsVF6VG4JJ

GRLS_grlsVF6VG4JJ is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsVF6VG4JJ in the atlas
About GRLS_grlsVF6VG4JJ

GRLS_grlsVF6VG4JJ sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsVF6VG4JJ's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsVF6VG4JJ's. Click any of them to keep exploring.

  1. GRLS_grlsUSU15XX 24.59
  2. GRLS_grlsSZWUUXUU 25.08
  3. GRLS_grlsLHAFNENN 25.80
  4. GRLS_grlsCK4B7LSS 25.90
  5. GRLS_grlsM0N38MNN 26.50
GRLS_grlsVF6VG4JJ's breed

GRLS_grlsVF6VG4JJ sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 A/A
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.611
y 10.778
z 5.306
PCA-256 distance from breed centroid
38.98
Outlier percentile in breed
72
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsVF6VG4JJ scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC13 z = -3.86
  • chr11:38,528,765 loading 0.0255
  • chr18:48,123,615 loading 0.0255
  • chr15:30,849,502 loading 0.0253
PC204 z = 2.47
  • chr5:63,349,947 loading 0.0351
  • chr5:63,561,040 loading 0.0350
  • chr5:3,335,614 loading -0.0334
PC224 z = 2.25
  • chr1:60,626,811 loading 0.0345
  • chr1:60,550,367 loading 0.0321
  • chr7:17,102,947 loading 0.0300
Ancestry reconstruction error: 0.70