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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsVKDMBBXX

GRLS_grlsVKDMBBXX is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsVKDMBBXX in the atlas
About GRLS_grlsVKDMBBXX

GRLS_grlsVKDMBBXX sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsVKDMBBXX's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsVKDMBBXX's. Click any of them to keep exploring.

  1. GRLS_grlsRCOJH033 19.37
  2. GRLS_grlsJKE6Z88 22.17
  3. GRLS_grlsI9WFVMM 22.52
  4. GRLS_grls5ZUT2BYY 31.34
  5. GRLS_grls67WPRHYY 32.05
GRLS_grlsVKDMBBXX's breed

GRLS_grlsVKDMBBXX sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 85%
  2. Labrador Retriever 15%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.206
y 10.293
z 6.527
PCA-256 distance from breed centroid
36.89
Outlier percentile in breed
63
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsVKDMBBXX scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC154 z = -3.92
  • chr34:1,972,619 loading 0.0431
  • chr34:1,533,247 loading 0.0397
  • chr34:2,125,452 loading 0.0365
PC107 z = -2.78
  • chr10:6,497,921 loading 0.0390
  • chr3:5,565,848 loading -0.0351
  • chr3:6,720,531 loading 0.0336
PC163 z = 2.67
  • chr34:1,919,265 loading 0.0369
  • chr34:2,440,834 loading -0.0368
  • chr34:1,346,136 loading 0.0366
Ancestry reconstruction error: 0.63