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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsVXXU25GG

GRLS_grlsVXXU25GG is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsVXXU25GG in the atlas
About GRLS_grlsVXXU25GG

GRLS_grlsVXXU25GG sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsVXXU25GG's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsVXXU25GG's. Click any of them to keep exploring.

  1. GRLS_grlsJZ8LQDRR 26.01
  2. GRLS_grls82YV1J66 31.98
  3. GRLS_grlsDOVQ9OJJ 32.06
  4. GRLS_grlsDO2VF8ZZ 32.27
  5. Oldies_grls9277d66f 32.30
GRLS_grlsVXXU25GG's breed

GRLS_grlsVXXU25GG sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.599
y 11.082
z 7.754
PCA-256 distance from breed centroid
31.82
Outlier percentile in breed
37
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsVXXU25GG scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC119 z = -3.24
  • chr24:2,576,794 loading 0.0370
  • chr6:3,625,190 loading 0.0350
  • chr6:3,210,008 loading -0.0323
PC205 z = -3.21
  • chr28:15,673,727 loading 0.0386
  • chr7:26,386,959 loading -0.0358
  • chr7:26,293,949 loading -0.0338
PC208 z = -2.92
  • chr17:4,173,842 loading 0.0377
  • chr17:4,128,965 loading 0.0376
  • chr17:4,233,511 loading 0.0366
Ancestry reconstruction error: 0.61