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GRLS Hero · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsX5U5H955

GRLS_grlsX5U5H955 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsX5U5H955 in the atlas
About GRLS_grlsX5U5H955

GRLS_grlsX5U5H955 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
GRLS_grlsX5U5H955's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsX5U5H955's. Click any of them to keep exploring.

  1. GRLS_grls5FQQCVEE 33.86
  2. GRLS_grls6225DWII 35.51
  3. GRLS_grlsTZWAHYAA 35.98
  4. GRLS_grls734CP6GG 35.99
  5. GRLS_grls5KFD0PNN 36.05
GRLS_grlsX5U5H955's breed

GRLS_grlsX5U5H955 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 A/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.976
y 10.059
z 8.207
PCA-256 distance from breed centroid
33.72
Outlier percentile in breed
46
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsX5U5H955 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC161 z = -3.28
  • chr25:6,699,887 loading 0.0385
  • chr8:38,372,734 loading -0.0369
  • chr15:23,258,994 loading -0.0343
PC220 z = 3.28
  • chr23:1,615,600 loading 0.0324
  • chr16:44,022,534 loading 0.0322
  • chr20:3,540,281 loading -0.0307
PC221 z = -2.53
  • chr23:23,759,985 loading 0.0312
  • chr2:32,595,915 loading 0.0312
  • chr3:6,457,748 loading -0.0306
Ancestry reconstruction error: 0.56