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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsYLJ61233

GRLS_grlsYLJ61233 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsYLJ61233 in the atlas
About GRLS_grlsYLJ61233

GRLS_grlsYLJ61233 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
GRLS_grlsYLJ61233's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsYLJ61233's. Click any of them to keep exploring.

  1. GRLS_grlsSE979DGG 24.20
  2. Oldies_grls38ba8195 29.80
  3. Oldies_grls28ef05a7 30.36
  4. Oldies_grls0609c300 31.53
  5. GRLS_grlsV9M0L522 31.57
GRLS_grlsYLJ61233's breed

GRLS_grlsYLJ61233 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.220
y 9.189
z 7.577
PCA-256 distance from breed centroid
39.20
Outlier percentile in breed
73
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsYLJ61233 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC66 z = -5.02
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC87 z = -4.00
  • chr18:17,740,291 loading 0.0425
  • chr18:13,022,424 loading -0.0364
  • chr18:14,917,450 loading -0.0361
PC64 z = 3.14
  • chr8:38,372,734 loading 0.0317
  • chr23:20,107,050 loading 0.0304
  • chr23:19,874,668 loading -0.0292
Ancestry reconstruction error: 0.62