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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsYSE2T1LL

GRLS_grlsYSE2T1LL is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsYSE2T1LL in the atlas
About GRLS_grlsYSE2T1LL

GRLS_grlsYSE2T1LL sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsYSE2T1LL's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsYSE2T1LL's. Click any of them to keep exploring.

  1. GRLS_grlsGB9P9CGG 31.86
  2. GRLS_grlsNZ3N1DGG 32.69
  3. GRLS_grls0TA2I2SS 32.89
  4. GRLS_grlsLLH2XVSS 33.48
  5. GRLS_grlsLWNTFXTT 33.61
GRLS_grlsYSE2T1LL's breed

GRLS_grlsYSE2T1LL sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 A/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 9.078
y 10.245
z 9.582
PCA-256 distance from breed centroid
37.42
Outlier percentile in breed
65
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsYSE2T1LL scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC138 z = 3.13
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
PC99 z = -3.10
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
PC150 z = -2.76
  • chr18:2,954,407 loading 0.0354
  • chr4:9,808,812 loading -0.0348
  • chr24:4,114,956 loading 0.0343
Ancestry reconstruction error: 0.59