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Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

GRLS_grlsZKDZ9N00

GRLS_grlsZKDZ9N00 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See GRLS_grlsZKDZ9N00 in the atlas
About GRLS_grlsZKDZ9N00

GRLS_grlsZKDZ9N00 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
GRLS_grlsZKDZ9N00's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to GRLS_grlsZKDZ9N00's. Click any of them to keep exploring.

  1. GRLS_grlsTGIYGC55 31.00
  2. GRLS_grlsEOGNUT66 32.12
  3. GRLS_grlsLO4BVHRR 32.77
  4. PFZ23G01_PFZ23G01 33.73
  5. PFZ7D05_PFZ7D05 33.75
GRLS_grlsZKDZ9N00's breed

GRLS_grlsZKDZ9N00 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.175
y 10.654
z 8.893
PCA-256 distance from breed centroid
33.22
Outlier percentile in breed
43
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which GRLS_grlsZKDZ9N00 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC63 z = 3.47
  • chr22:1,969,643 loading 0.0329
  • chr22:1,892,165 loading 0.0327
  • chr17:12,181,234 loading 0.0322
PC233 z = -3.31
  • chr16:48,608,303 loading 0.0348
  • chr13:24,655,299 loading -0.0330
  • chr23:1,734,032 loading 0.0330
PC232 z = 2.96
  • chr8:13,394,852 loading 0.0320
  • chr30:2,998,314 loading 0.0313
  • chr12:26,709,882 loading 0.0290
Ancestry reconstruction error: 0.56