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GRLS Hero Oldie · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

Oldies_grls05a4dd5c

Oldies_grls05a4dd5c is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See Oldies_grls05a4dd5c in the atlas
About Oldies_grls05a4dd5c

Oldies_grls05a4dd5c sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Oldies_grls05a4dd5c's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to Oldies_grls05a4dd5c's. Click any of them to keep exploring.

  1. GRLS_grls0VWS5ZPP 31.80
  2. GRLS_grls7DIQZ866 32.14
  3. GRLS_grlsM1KYBISS 32.97
  4. GRLS_grlsFC1D8UPP 33.45
  5. GRLS_grlsTPPW1BMM 33.63
Oldies_grls05a4dd5c's breed

Oldies_grls05a4dd5c sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 82%
  2. Labrador Retriever 18%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/T
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.025
y 9.637
z 8.433
PCA-256 distance from breed centroid
32.09
Outlier percentile in breed
38
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls05a4dd5c scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC166 z = -3.70
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
PC66 z = -2.45
  • chr22:1,996,400 loading 0.0426
  • chr22:1,969,643 loading -0.0423
  • chr22:2,473,315 loading 0.0395
PC179 z = -2.42
  • chr34:3,531,310 loading 0.0341
  • chr34:3,128,578 loading -0.0327
  • chr4:57,360,298 loading -0.0326
Ancestry reconstruction error: 0.55