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GRLS Hero Oldie · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

Oldies_grls6f4b5fd1

Oldies_grls6f4b5fd1 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See Oldies_grls6f4b5fd1 in the atlas
About Oldies_grls6f4b5fd1

Oldies_grls6f4b5fd1 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Wire-coat furnishings - the eyebrow + beard variant at RSPO2.
Oldies_grls6f4b5fd1's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to Oldies_grls6f4b5fd1's. Click any of them to keep exploring.

  1. Oldies_grlscca98e33 27.00
  2. GRLS_grls3726GINN 27.70
  3. GRLS_grls82YV1J66 28.54
  4. GRLS_grls4ZRBRLGG 28.81
  5. Oldies_grlsb817088e 29.31
Oldies_grls6f4b5fd1's breed

Oldies_grls6f4b5fd1 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 77%
  2. Labrador Retriever 23%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/C
HMGA2 T/T
SMAD2
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 T/T
FGF5 C/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 6.832
y 11.716
z 7.966
PCA-256 distance from breed centroid
31.78
Outlier percentile in breed
37
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grls6f4b5fd1 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC176 z = -3.25
  • chr13:1,243,516 loading 0.0372
  • chr13:4,612,002 loading -0.0358
  • chr13:2,021,999 loading -0.0342
PC43 z = -3.11
  • chr28:11,007,373 loading 0.0365
  • chr28:5,497,677 loading 0.0343
  • chr7:43,226,466 loading 0.0325
PC99 z = 2.45
  • chr34:1,972,619 loading 0.0494
  • chr34:1,533,247 loading 0.0454
  • chr34:2,440,834 loading -0.0445
Ancestry reconstruction error: 0.63