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GRLS Hero Oldie · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

Oldies_grlsc6575aa9

Oldies_grlsc6575aa9 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See Oldies_grlsc6575aa9 in the atlas
About Oldies_grlsc6575aa9

Oldies_grlsc6575aa9 is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
Oldies_grlsc6575aa9's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to Oldies_grlsc6575aa9's. Click any of them to keep exploring.

  1. GRLS_grls8DD6Y7GG 30.69
  2. GRLS_grlsD3VDRN66 31.08
  3. GRLS_grls405NWMQQ 31.66
  4. GRLS_grls9GMRJACC 32.39
  5. GRLS_grlsBO29BWSS 32.41
Oldies_grlsc6575aa9's breed

Oldies_grlsc6575aa9 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R C/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 10.250
y 9.948
z 8.816
PCA-256 distance from breed centroid
43.21
Outlier percentile in breed
87
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grlsc6575aa9 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC110 z = -4.20
  • chr25:1,742,133 loading 0.0401
  • chr28:2,607,542 loading 0.0393
  • chr25:1,819,027 loading 0.0392
PC191 z = 3.72
  • chr19:11,721,356 loading 0.0330
  • chr20:8,205,745 loading 0.0329
  • chr25:2,138,835 loading -0.0328
PC138 z = 3.36
  • chr15:23,130,452 loading 0.0401
  • chr28:1,724,663 loading 0.0367
  • chr15:42,263,341 loading 0.0350
Ancestry reconstruction error: 0.65