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GRLS Hero Oldie · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

Oldies_grlsccffb117

Oldies_grlsccffb117 is a Golden Retriever from the GRLS research cohort. One of 18,477 dogs in the atlas.

See Oldies_grlsccffb117 in the atlas
About Oldies_grlsccffb117

Oldies_grlsccffb117 sits at the edge of the Golden Retriever cluster but still well within it.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
Oldies_grlsccffb117's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to Oldies_grlsccffb117's. Click any of them to keep exploring.

  1. GRLS_grls4V7ZYTLL 30.89
  2. GRLS_grlsSWZTK2YY 32.43
  3. PILOT_grlsIC0ZIROO 33.49
  4. Oldies_grls0609c300 34.76
  5. GRLS_grlsTM2KR9LL 35.22
Oldies_grlsccffb117's breed

Oldies_grlsccffb117 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 81%
  2. Labrador Retriever 19%
Source

From the Golden Retriever Lifetime Study . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/G
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.220
y 9.412
z 7.684
PCA-256 distance from breed centroid
37.69
Outlier percentile in breed
66
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which Oldies_grlsccffb117 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC158 z = 3.64
  • chr1:69,893,718 loading 0.0314
  • chr1:64,453,595 loading -0.0313
  • chr8:29,102,271 loading -0.0309
PC251 z = 3.38
  • chr25:40,121,397 loading 0.0326
  • chr28:17,013,099 loading 0.0310
  • chr26:15,170,564 loading 0.0302
PC77 z = 3.21
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
Ancestry reconstruction error: 0.63