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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ24H02_PFZ24H02

PFZ24H02_PFZ24H02 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ24H02_PFZ24H02 in the atlas
About PFZ24H02_PFZ24H02

PFZ24H02_PFZ24H02 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ24H02_PFZ24H02's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ24H02_PFZ24H02's. Click any of them to keep exploring.

  1. PFZ26B07_PFZ26B07 22.58
  2. PFZ26H07_PFZ26H07 34.22
  3. PFZ4F08_PFZ4F08 34.26
  4. GRLS_grlsAWQG9LMM 34.27
  5. GRLS_grlsRSFVQY99 34.44
PFZ24H02_PFZ24H02's breed

PFZ24H02_PFZ24H02 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 78%
  2. Labrador Retriever 22%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 A/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.579
y 9.627
z 8.180
PCA-256 distance from breed centroid
32.95
Outlier percentile in breed
42
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ24H02_PFZ24H02 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC121 z = 3.95
  • chr1:99,506,167 loading 0.0408
  • chr15:22,270,589 loading -0.0399
  • chr15:22,844,988 loading -0.0387
PC156 z = 3.46
  • chr24:4,330,562 loading 0.0395
  • chr1:76,396,561 loading -0.0378
  • chr24:4,851,124 loading -0.0357
PC164 z = 2.77
  • chr19:16,549,845 loading 0.0354
  • chr28:2,607,542 loading -0.0326
  • chr28:1,724,663 loading 0.0325
Ancestry reconstruction error: 0.56