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CanVAS Hayward2016 · Founder
Cosmic medallion portrait of PFZ27C01_PFZ27C01, a Golden Retriever
AI portrait
About this portrait

This portrait was algorithmically built from this dog's genome: their genotype at 8 morphology loci (coat length, curl, color, ear set, body size, head shape, skull, furnishings) plus their position within the CanVAS Founder atlas. The same dog always reproduces the same portrait. A different dog with different alleles gets a different portrait.

PFZ27C01_PFZ27C01

PFZ27C01_PFZ27C01 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ27C01_PFZ27C01 in the atlas
About PFZ27C01_PFZ27C01

PFZ27C01_PFZ27C01 sits near the center of the Golden Retriever cluster - genetically very typical for the breed.

  • Predicted large by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ27C01_PFZ27C01's nearest neighbors

The five dogs in the atlas whose genomes sit closest to PFZ27C01_PFZ27C01's. Click any of them to keep exploring.

  1. GRLS_grls4WDUC3II Golden Retriever 28.55
  2. GRLS_grlsF2IBC5 Golden Retriever 28.78
  3. GRLS_grls0FZYUVOO Golden Retriever 29.00
  4. GRLS_grlsDRI8OU00 Golden Retriever 29.09
  5. GRLS_grlsVWUHSQNN Golden Retriever 29.21
PFZ27C01_PFZ27C01's breed

PFZ27C01_PFZ27C01 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation. Methodology.

  1. Golden Retriever 66%
  2. Labrador Retriever 35%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 T/C
KRT71 C/C
MC1R T/C
Ear set
MSRB3 A/A
Skull shape
BMP3 C/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 7.315
y 11.289
z 7.735
PCA-256 distance from breed centroid
27.41
Outlier percentile in breed
11
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ27C01_PFZ27C01 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC155 z = 1.96
  • chr3:3,559,803 loading 0.0324
  • chr6:3,540,503 loading -0.0319
  • chr15:3,475,065 loading 0.0316
PC190 z = -1.93
  • chr30:3,320,848 loading 0.0326
  • chr30:3,423,077 loading 0.0326
  • chr30:3,200,238 loading 0.0321
PC200 z = -1.78
  • chr26:9,892,015 loading 0.0403
  • chr19:3,081,516 loading 0.0393
  • chr26:3,675,581 loading 0.0362
Ancestry reconstruction error: 0.55
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