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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ27C09_PFZ27C09

PFZ27C09_PFZ27C09 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ27C09_PFZ27C09 in the atlas
About PFZ27C09_PFZ27C09

PFZ27C09_PFZ27C09 sits well inside the Golden Retriever cluster - a fairly typical example.

  • Predicted giant by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Smooth coat. No wire-furnishings variant at RSPO2.
PFZ27C09_PFZ27C09's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ27C09_PFZ27C09's. Click any of them to keep exploring.

  1. PFZ29B04_PFZ29B04 23.19
  2. PILOT_grlsHRUPI9FF 32.51
  3. GRLS_grls7K6Z7LXX 33.33
  4. GRLS_grls7K5JPQDD 34.79
  5. GRLS_grls2MFWROCC 34.90
PFZ27C09_PFZ27C09's breed

PFZ27C09_PFZ27C09 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 79%
  2. Labrador Retriever 21%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 C/A
HMGA2 T/T
SMAD2 G/G
LCORL G/G
STC2 C/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/C
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 T/T
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.076
y 11.011
z 8.327
PCA-256 distance from breed centroid
33.55
Outlier percentile in breed
45
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ27C09_PFZ27C09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC216 z = -2.97
  • chr6:57,387,289 loading 0.0303
  • chr14:13,904,420 loading -0.0294
  • chr30:3,709,721 loading 0.0293
PC160 z = -2.80
  • chr26:4,196,092 loading 0.0325
  • chr1:1,402,180 loading -0.0321
  • chr17:2,046,668 loading -0.0309
PC166 z = 2.75
  • chr24:4,330,562 loading 0.0317
  • chr24:4,114,956 loading -0.0315
  • chr1:95,775,744 loading -0.0303
Ancestry reconstruction error: 0.58