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CanVAS Hayward2016 · Founder
Genome medallion
About this medallion

This medallion is built from this dog's genome. The outer ring is its breed composition, a corrected ancestry decomposition, colored to match its star in the atlas. The inner gauges are the traits we predict. If an owner claims the page, their real photo can take its place.

PFZ32A09_PFZ32A09

PFZ32A09_PFZ32A09 is a Golden Retriever from the Hayward2016 research cohort. One of 18,477 dogs in the atlas.

See PFZ32A09_PFZ32A09 in the atlas
About PFZ32A09_PFZ32A09

PFZ32A09_PFZ32A09 is a notable Golden Retriever - distinctive within the breed.

  • Predicted medium by the six body-size genes the atlas reads (IGF1, HMGA2, SMAD2, LCORL, STC2, ADAMTS17).
  • Standard leg length. No chondrodysplasia retrogene variant.
  • Carrier of the RSPO2 wire-coat variant (single copy).
PFZ32A09_PFZ32A09's nearest neighbors

The five dogs in the atlas whose genetic profiles sit closest to PFZ32A09_PFZ32A09's. Click any of them to keep exploring.

  1. PFZ7D04_PFZ7D04 30.35
  2. PFZ26H07_PFZ26H07 34.31
  3. GRLS_grls95XW2JVV 35.19
  4. GRLS_grlsDLTFLPZZ 36.12
  5. GRLS_grlsKYFC2IPP 36.60
PFZ32A09_PFZ32A09's breed

PFZ32A09_PFZ32A09 sits in the Golden Retriever cluster, with genome overlap to Labrador Retriever - sister breeds nearby in the atlas.

Breed similarity from non-negative least squares against 91 breed centroids in PCA-256 space, corrected for atlas sample-size imbalance. Without correction, Goldens (22% of the atlas) leak into every dog's raw NNLS breakdown; with it, the bias falls out. Raw fractions stay in the dataset for re-derivation.

  1. Golden Retriever 83%
  2. Labrador Retriever 17%
Source

From the CanVAS (Hayward2016 cohort) . Breed-page reference: Golden Retriever.

Genotype at the 15 morphology loci

The actual allele call at each locus's representative SNP for this dog. Each gene name links to its page where you can see the per-breed frequency table and the direction of effect.

Body size
IGF1 A/A
HMGA2 C/T
SMAD2 G/G
LCORL G/G
STC2 A/A
ADAMTS17 G/A
Leg length
FGF4·CFA18 C/C
FGF4·CFA12 C/C
Coat
RSPO2 C/T
FGF5 C/C
KRT71 C/C
MC1R T/T
Ear set
MSRB3 A/A
Skull shape
BMP3 C/C
SMOC2 G/G
Technical details
click to expand

The numbers behind the placement. Useful for researchers reproducing the math or debugging an unexpected position; not interesting to most readers.

UMAP-3D position
x 8.499
y 9.245
z 8.790
PCA-256 distance from breed centroid
41.93
Outlier percentile in breed
84
lower = more typical
Top-3 principal components by |z|

The 3 PCs on which PFZ32A09_PFZ32A09 scores most extreme, with the 3 highest-loading SNPs on each. Foundation for the future genome-ring visualization.

PC77 z = -3.40
  • chr23:13,507,176 loading 0.0356
  • chr6:36,116,228 loading 0.0355
  • chr23:14,586,660 loading 0.0337
PC179 z = 3.40
  • chr34:3,531,310 loading 0.0341
  • chr34:3,128,578 loading -0.0327
  • chr4:57,360,298 loading -0.0326
PC122 z = -3.35
  • chr1:69,449,779 loading 0.0431
  • chr1:69,785,342 loading 0.0329
  • chr10:4,740,874 loading 0.0326
Ancestry reconstruction error: 0.63